I have a pony that has the same problem. I live in south Ga and the gnats are terrible. I have tried putting Vaseline in the ears. It is greasy but it seems to help deter the gnats or whatever irratates the inside of her ears.
Good information to know, and it is usually spring time when the gnats and little bugs, are getting so bad.
I noticed this earlier with my horse a few days ago. There were tons of little midges stuck in the hair in his ears and they were driving him mad.