The one huge consideration that was entirely missed in this otherwise detailed article is the saddle itself - which can often be the cause of misdiagnosed lameness! Check out Jochen Schleese's book "Suffering in Silence: The Saddle Fit Link to Physical and Psychological Trauma in Horses"(available through Horsebooksetc.com and Amazon.com in e-format) for some insights into the various reasons for equine lameness. Before you go into expensive pharmaceuticals and neurological diagnoses it might be worth investing in a simple saddle fit evaluation by a qualified fitter.
Slow motion video analysis is a tool that is very helpful to assess subtle lameness issues in the horse. It is an invaluable tool to a reliably assess and monitor the response to nerve and joint blocks as well as treatment and rehabilitation.